Esimerkkieräajokomennostot Mahdissa
Esimerkkikomentosarjoja erityyppisten ohjelmien ajamiseen:
Note
Jos käytät näitä komentosarjoja (suosittelemme!), muista muuttaa resurssit
(aika, tehtävät jne.) tarpeitasi vastaaviksi ja korvata myprog <options>
sen ohjelman suoritettavalla tiedostolla (ja valinnoilla), jonka haluat ajaa,
sekä <project> projektisi nimellä.
MPI
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=medium
#SBATCH --time=02:00:00
#SBATCH --nodes=10
#SBATCH --ntasks-per-node=128
srun myprog <options>
Suuri MPI-ajo
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=large
#SBATCH --time=02:00:00
#SBATCH --nodes=100
#SBATCH --ntasks-per-node=128
srun myprog <options>
MPI + OpenMP
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=large
#SBATCH --time=02:00:00
#SBATCH --nodes=100
#SBATCH --ntasks-per-node=16
#SBATCH --cpus-per-task=8
# Set the number of threads based on --cpus-per-task
export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
srun myprog <options>
MPI + OpenMP säikeiden sidonnalla
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=large
#SBATCH --time=02:00:00
#SBATCH --nodes=100
#SBATCH --ntasks-per-node=16
#SBATCH --cpus-per-task=8
# Set the number of threads based on --cpus-per-task
export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
export OMP_PLACES=cores
srun myprog <options>
MPI + OpenMP samanaikaisella monisäikeistyksellä
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=large
#SBATCH --time=02:00:00
#SBATCH --nodes=100
#SBATCH --hint=multithread
#SBATCH --ntasks-per-node=16
#SBATCH --cpus-per-task=16
# Note that the ntasks-per-node * cpus-per-task = 256
# Set the number of threads based on --cpus-per-task
export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
srun myprog <options>
MPI, yksi tehtävä per NUMA-alue
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=medium
#SBATCH --time=02:00:00
#SBATCH --nodes=10
#SBATCH --ntasks-per-node=8
#SBATCH --cpus-per-task=16
# A compute node has 8 NUMA domains, each containing 16 cores
# Slurm places the MPI tasks --cpus-per-task apart
srun myprog <options>
OpenMP
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=medium
#SBATCH --time=02:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=128
# set the number of threads based on --cpus-per-task
export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
srun myprog <options>
Paikallinen levy ja small-osio
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=small
#SBATCH --time=02:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=4
#SBATCH --gres=nvme:100
# Small partition:
# - Each job gets 1.875 GB memory per reserved core automatically.
# If a task needs more memory, use `--cpus-per-task` option.
# - Memory reservation slurm options are ignored
# - Local NVMe disk up to 3500 GiB is available, reserve with
# `--gres=nvme:<size in GiB>` option and use through
# $LOCAL_SCRATCH environment variable
export MY_JOB_TMPDIR=$LOCAL_SCRATCH
srun myprog <options>
1–2 GPU:n työ eli gpusmall-osio
#!/bin/bash
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=gpusmall
#SBATCH --time=02:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=32
#SBATCH --gres=gpu:a100:1
## if local fast disk on a node is also needed, replace above line with:
#SBATCH --gres=gpu:a100:1,nvme:900
#
## Please remember to load the environment your application may need.
## And use the variable $LOCAL_SCRATCH in your batch job script
## to access the local fast storage on each node.
srun myprog <options>
4 GPU:ta per solmu ja monisolmuinen GPU-ajo eli gpumedium-osio
#SBATCH --job-name=example
#SBATCH --account=<project>
#SBATCH --partition=gpumedium
#SBATCH --time=02:00:00
#SBATCH --nodes=2
#SBATCH --ntasks=8
#SBATCH --cpus-per-task=32
#SBATCH --gres=gpu:a100:4
## if local fast disk on nodes is also needed, replace above line with:
#SBATCH --gres=gpu:a100:4,nvme:3600
#
## Please remember to load the environment your application may need.
## And use the variable $LOCAL_SCRATCH in your batch job script
## to access the local fast storage on each node.
srun myprog <options>