HUMAnN2

Description

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. This process (functional profiling) aims to describe the metabolic potential of a microbial community and its members.

Availability

  • HUMAnN 2.2.1 is available in Puhti

Usage

In Puhti, HUMAnN2 is installed as part of gcc 9.1.0 compatible biopythontools module. To activate it, run commands:

module load biokit
module load biopythontools
humann2

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