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HUMAnN2

Description

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. This process (functional profiling) aims to describe the metabolic potential of a microbial community and its members.

License

Free to use and open source under MIT License.

Availability

Versions available in Puhti * HUMAnN 2.8.8 * MetaPhlAn 3.0.7 * PhyloPhlAn 3.0.60 * StrainPhlAn 3.0

Usage

In Puhti, HUMAnN2 is installed as part of gcc 9.1.0 compatible biopythontools module. To activate it, run commands:

module load biokit
module load biopythontools/3.9.1-gcc_9.1.0

humann2

More information

Last edited Tue Apr 13 2021