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MetaPhlAn

Description

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic sequencing data. MetaPhlAn relies on unique clade-specific marker genes identified from ~17,000 reference genomes.

Availability

  • MetaPhlAn 3.0 is available in Puhti

Usage

In Puhti, MetaPhlAn is installed as part of gcc 9.1.0 compatible biopythontools module. To activate it, run commands:

module load biokit
module load biopythontools
metaphlan

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