Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Free to use and open source under MIT License
- Puhti: 3.2, 3.4, 3.5
In Puhti, latest version of Cutadapt can be taken in use by loading a module:
module load cutadapt
You can check the available versions with command:
module spider cutadapt
You can load a specific version with comamnd:
module load cutadapt/3.2
The basic syntax is:
Cutadapt should be run either in an interactive session or as a batch job.
More information about Cutadapt can be found from the Cutadapt home page.