PANNZER2/SANSPANZ is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and gene ontology (GO) classes.
Pannzer has been published with the GNU Public Licence v3.
In puhti SANSPANZ annotation tool is taken in use with command:
module load biokit
After loading the module you can launch sanspanz analysis using command
runsanspanz.py. For example:
runsanspanz.py -R -m Pannzer -s "species name" -i input_seqs.fasta -o results.csv
-o. Also three other output files are created: * Pannzer.out_1 contains details of the description (DE) prediction. * Pannzer.out_2 contains details of the GO prediction. * Pannzer.out_3 is a summary of all predicted annotations.
Pannzer.out_3 can be converted to HTML-format with command
anno2html.pl < Pannzer.out_3 > annotations.html
Note, that in Puhti you should always use
runsanspanz.py with option
-R that sends the
analysis jobs to the annotation sever maintained by the Holm group. Thus, the job does not use
the resources of Puhti and it can be run as an intercative job in a login node.
For more information, execute command:
Last edited Mon Apr 20 2020