PANNZER2/SANSPANZ

PANNZER2/SANSPANZ is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and gene ontology (GO) classes.

PANNZER2/SANSPANZ
- License
- Available
- Usage
- Support
- More information

License

PANNZER has been published with the GNU Public Licence v3.

Available

Roihu-CPU: 3.20250512 (module sanspanz), via the bio-apps module. The version number is the release date of the SANSPANZ 3 package.

Usage

SANSPANZ is part of the bio-apps collection on Roihu. Load the bio-apps module tree and then the SANSPANZ module:

module load bio-apps/v202603
module load sanspanz/3.20250512

After loading the module, you can launch SANSPANZ analysis using command runsanspanz.py. For example:

runsanspanz.py -R -m Pannzer -s "species name" -i input_seqs.fasta -o results.csv

The species name is used to determine taxonomic distances. The output is written to the file defined with option -o. Also, three other output files are created:

Pannzer.out_1 contains details of the description (DE) prediction.
Pannzer.out_2 contains details of the GO prediction.
Pannzer.out_3 is a summary of all predicted annotations.

Note, that on Roihu you should always use runsanspanz.py with option -R that sends the analysis jobs to the annotation server maintained by the Holm group. Thus, the job does not use the resources of Roihu, and it can be run as an interactive job on a login node.

Support

CSC Service Desk

More information

For more information, execute command:

runsanspanz.py -h

Or study the PANNZER home page:

PANNZER home page