IGV

The Integrative Genomics Viewer (IGV) is a high-performance, interactive tool for the visual exploration of genomic data, including aligned sequence reads, variants and genomic annotations.

• IGV
  • License
  • Available
  • Usage
  • Support
  • More information

License

Free to use and open source under the MIT License.

Available

• Roihu: 2.19.7, via the bio-apps module.

Usage

IGV is a graphical application, so it is best run through the Roihu web interface remote desktop:

1. Open the Desktop app in the Roihu web interface.
2. Open a terminal from Applications -> Terminal Emulator.
3. Load the modules and start the IGV GUI with the igv.sh launch script:

module load bio-apps/v202603
module load igv/2.19.7
igv.sh

Support

CSC Service Desk

More information

• IGV home page
• IGV user guide

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