FastQC

FastQC is a quality control tool for high-throughput sequence data.

• FastQC
  • License
  • Available
  • Usage
  • Support
  • More information

License

Free to use and open source under GNU GPLv3.

Available

• Roihu: 0.12.1, via the bio-apps module.

Usage

FastQC is part of the bio-apps collection on Roihu. Load the bio-apps module tree and then the FastQC module:

module load bio-apps/v202603
module load fastqc/0.12.1

You can then run FastQC:

fastqc --help

If you run FastQC without command line arguments, it will open a GUI. The best way to run a GUI remotely on Roihu is to use the Roihu web interface desktop.

Support

CSC Service Desk

More information

• FastQC Homepage

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