FastQC

Description

FastQC is a quality control tool for high throughput sequence data.

• FastQC
  • Description
  • License
  • Available
    • Version on CSC's Servers
  • Usage
  • Manual

License

Free to use and open source under GNU GPLv3.

Available

Version on CSC's Servers

• Puhti: 0:11.8
• Chipster graphical user interface

Usage

To initialize in Puhti use:

module load biokit

You can then start FastQC:

fastqc

FastQC is a graphical software so if you use it in Puhti you will need a working X-term connection (FreeNX remote desktop is not yet available in Puhti).

Manual

• FastQC Homepage

• CD-HIT home page

---

Last update: March 29, 2021