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Warning!

Puhti and Mahti computing services have been decommissioned and no new jobs are accepted or executed on its compute nodes. Puhti and Mahti login nodes and storage services are planned to remain available until 15 October 2026. Clean up unnecessary files and move any data you need to keep by 31 August 2026. See the Roihu data migration guide for instructions on transferring your data to Roihu.

FastQC

FastQC is a quality control tool for high-throughput sequence data.

License

Free to use and open source under GNU GPLv3.

Available

  • Roihu: 0.12.1, via the bio-apps module.

Usage

FastQC is part of the bio-apps collection on Roihu. Load the bio-apps module tree and then the FastQC module:

module load bio-apps/v202603
module load fastqc/0.12.1

You can then run FastQC:

fastqc --help

If you run FastQC without command line arguments, it will open a GUI. The best way to run a GUI remotely on Roihu is to use the Roihu web interface desktop.

Support

CSC Service Desk

More information