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FastQC

Description

FastQC is a quality control tool for high throughput sequence data.

License

Free to use and open source under GNU GPLv3.

Available

Version on CSC's Servers

  • Puhti: 0:11.8
  • Chipster graphical user interface

Usage

To initialize in Puhti use:

module load biokit
You can then start FastQC:
fastqc

FastQC is a graphical software so if you use it in Puhti you will need a working X-term connection (FreeNX remote desktop is not yet available in Puhti).

Manual

Last edited Mon Mar 29 2021