Skip to content
Type to start searching

    Table of Contents

    FastQC

    Description

    FastQC is a quality control tool for high throughput sequence data.

    License

    Free to use and open source under GNU GPLv3.

    Available

    Version on CSC's Servers

    • Puhti: 0:11.8
    • Chipster graphical user interface

    Usage

    To initialize in Puhti use: 

    module load biokit
    You can then start FastQC: 
    fastqc

    FastQC is a graphical software so if you use it in Puhti you will need a working X-term connection (FreeNX remote desktop is not yet available in Puhti).

    Manual

    Last edited Mon Mar 29 2021