FastQC

Description

FastQC is a quality control tool for high throughput sequence data.

• FastQC
  • Description
  • License
  • Available
    • Version on CSC's Servers
  • Usage
  • Manual

License

Free to use and open source under GNU GPLv3.

Available

Version on CSC's Servers

• Puhti: 0.11.8
• Chipster graphical user interface

Usage

To initialize in Puhti use:

module load biokit

You can then run FastQC:

fastqc --help

If you run FastQC without command line arguments, it will open a GUI. The best way to run a GUI remotely on Puhti is to use the Puhti web interface desktop.

Manual

• FastQC Homepage

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Last update: October 10, 2022