mpiP: Lightweight MPI Profiler
Available
Puhti: 3.4.1
Mahti: 3.4.1
Usage
mpiP is a lightweight MPI profiler which uses statistical sampling to record profiling data. It generates less overhead and much less data than tracing tools. In order to use no code changes are required, only a re-link is needed. For both Mahti and Puhti, in addition to the compiler and MPI modules, one has to load the mpiP module:
module load mpip
Next, the code is build as usual, but with the addition of the -g flag in compilation and the following linker flags. For Mahti one should use:
-lmpiP -lm -lbfd -liberty -L<path-to-unwind-lib> -lunwind
The path to the unwind library on mahti is /appl/spack/v014/install-tree/gcc-9.3.0/libunwind-1.3.1-otflii/lib.
Similarly, for Puhti the relinking is done with:
-lmpiP -lm -L<path-to-iberty-lib> -liberty -L<path-to-unwind-lib> -lunwind
The path to the iberty library is /appl/spack/install-tree/intel-19.0.4/libiberty-2.31.1-o4es74/lib/, while the path to unwind library is /appl/spack/install-tree/intel-19.0.4/libunwind-1.2.1-45uplb/lib/.
The above re-link will only work if it appears the last in the compiling line.
Note that the compile options -lmpiP ... have to be the last in the compiling list. For example in a Makefile we would have:
FC=mpif90
FCFLAGS=-O2 -g -fopenmp -march=native -fdefault-real-8 -fdefault-double-8 -lfftw3 -lfftw3_omp -lmpiP -lm -lbfd -liberty -L/appl/spack/v014/install-tree/gcc-9.3.0/libunwind-1.3.1-otflii/lib -lunwind
all : TwoDMPIPFC.f
$(FC) -o TwoDMPIPFC TwoDMPIPFC.f ${FCFLAGS}
module load mpip
export LD_LIBRARY_PATH=<path-to-unwind-lib>:<path-to-iberty-lib>:$LD_LIBRARY_PATH
export MPIP="-t 10.0 -k 2 -c"
mpiP: Set the report print threshold to [10.00%].
mpiP: Set the callsite stack traceback depth to [2].
mpiP:
mpiP: mpiP: mpiP V3.4.1 (Build Aug 28 2020/11:57:54)
mpiP: Direct questions and errors to mpip-help@lists.sourceforge.net
mpiP:
mpiP: Storing mpiP output in [./TwoDMPIPFC.256.181196.1.mpiP].
mpiP:
.mpiPfile indicated above. Below is an example:
@ mpiP
@ Command : /users/cristian/MahtimpiPTest/./TwoDMPIPFC
@ Version : 3.4.1
@ MPIP Build date : Aug 28 2020, 11:57:54
@ Start time : 2020 08 28 16:38:05
@ Stop time : 2020 08 28 16:38:14
@ Timer Used : PMPI_Wtime
@ MPIP env var : -t 10.0 -k 2
@ Collector Rank : 0
@ Collector PID : 181196
@ Final Output Dir : .
@ Report generation : Single collector task
@ MPI Task Assignment : 0 c1101.mahti.csc.fi
@ MPI Task Assignment : 1 c1101.mahti.csc.fi
...
---------------------------------------------------------------------------
@--- MPI Time (seconds) ---------------------------------------------------
---------------------------------------------------------------------------
Task AppTime MPITime MPI%
0 8.12 4.12 50.75
1 8.11 4.2 51.72
2 8.11 4.17 51.40
...
* 2.08e+03 1.05e+03 50.36
---------------------------------------------------------------------------
@--- Callsites: 8 ---------------------------------------------------------
---------------------------------------------------------------------------
ID Lev File/Address Line Parent_Funct MPI_Call
1 0 TwoDMPIPFC.f 432 forward_fft.3905 Alltoall
1 1 TwoDMPIPFC.f 184 update
2 0 TwoDMPIPFC.f 176 energy.3915 Reduce
2 1 TwoDMPIPFC.f 127 MAIN__
3 0 TwoDMPIPFC.f 545 backward_fft.3901 Alltoall
3 1 TwoDMPIPFC.f 214 update
4 0 TwoDMPIPFC.f 432 forward_fft.3905 Alltoall
4 1 TwoDMPIPFC.f 189 update
5 0 TwoDMPIPFC.f 545 backward_fft.3901 Alltoall
5 1 TwoDMPIPFC.f 171 energy.3915
6 0 TwoDMPIPFC.f 432 forward_fft.3905 Alltoall
6 1 TwoDMPIPFC.f 147 energy.3915
7 0 TwoDMPIPFC.f 176 energy.3915 Reduce
7 1 TwoDMPIPFC.f 109 MAIN__
8 0 TwoDMPIPFC.f 384 fft_init Barrier
8 1 TwoDMPIPFC.f 138 main
---------------------------------------------------------------------------
@--- Aggregate Time (top twenty, descending, milliseconds) ----------------
---------------------------------------------------------------------------
Call Site Time App% MPI% COV
Alltoall 6 4.6e+05 22.16 44.00 0.03
Alltoall 5 2.18e+05 10.50 20.85 0.09
Alltoall 1 1.16e+05 5.57 11.05 0.06
Alltoall 3 1.15e+05 5.54 11.00 0.02
Alltoall 4 1.14e+05 5.50 10.92 0.02
Barrier 8 2.19e+04 1.06 2.10 0.87
Reduce 7 713 0.03 0.07 3.71
Reduce 2 110 0.01 0.01 3.87
---------------------------------------------------------------------------
@--- Aggregate Sent Message Size (top twenty, descending, bytes) ----------
---------------------------------------------------------------------------
Call Site Count Total Avrg Sent%
Alltoall 1 512 6.71e+07 1.31e+05 20.00
Alltoall 3 512 6.71e+07 1.31e+05 20.00
Alltoall 5 512 6.71e+07 1.31e+05 20.00
Alltoall 4 512 6.71e+07 1.31e+05 20.00
Alltoall 6 512 6.71e+07 1.31e+05 20.00
Reduce 2 256 2.05e+03 8 0.00
Reduce 7 256 2.05e+03 8 0.00
---------------------------------------------------------------------------
@--- Callsite Time statistics (all, milliseconds): 2048 -------------------
---------------------------------------------------------------------------
Name Site Rank Count Max Mean Min App% MPI%
Alltoall 1 0 2 220 217 213 5.34 10.52
Alltoall 1 1 2 237 233 229 5.75 11.11
...
Alltoall 1 * 512 342 226 200 5.57 11.05
Alltoall 3 0 2 225 219 214 5.41 10.66
Alltoall 3 1 2 233 227 222 5.60 10.83
...
Alltoall 3 * 512 250 225 205 5.54 11.00
Alltoall 4 0 2 222 219 216 5.41 10.66
Alltoall 4 1 2 228 225 221 5.54 10.71
...
Alltoall 4 * 512 250 223 206 5.50 10.92
Alltoall 5 0 2 589 393 196 9.68 19.07
Alltoall 5 1 2 602 409 215 10.07 19.47
...
Alltoall 5 * 512 838 426 126 10.50 20.85
Alltoall 6 0 2 1.62e+03 915 212 22.55 44.45
Alltoall 6 1 2 1.63e+03 924 213 22.78 44.04
...
Alltoall 6 * 512 1.83e+03 898 178 22.16 44.00
Barrier 8 * 256 161 85.7 10.7 1.06 2.10
Reduce 2 * 256 16.9 0.43 0.00985 0.01 0.01
Reduce 7 * 256 101 2.79 0.0364 0.03 0.07
---------------------------------------------------------------------------
@--- Callsite Message Sent statistics (all, sent bytes) -------------------
---------------------------------------------------------------------------
Name Site Rank Count Max Mean Min Sum
Alltoall 1 0 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
Alltoall 1 1 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
...
Alltoall 1 * 512 1.311e+05 1.311e+05 1.311e+05 6.711e+07
Alltoall 3 0 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
Alltoall 3 1 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
...
Alltoall 3 * 512 1.311e+05 1.311e+05 1.311e+05 6.711e+07
Alltoall 4 0 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
Alltoall 4 1 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
...
Alltoall 4 * 512 1.311e+05 1.311e+05 1.311e+05 6.711e+07
Alltoall 5 0 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
Alltoall 5 1 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
...
Alltoall 5 * 512 1.311e+05 1.311e+05 1.311e+05 6.711e+07
Alltoall 6 0 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
Alltoall 6 1 2 1.311e+05 1.311e+05 1.311e+05 2.621e+05
...
Alltoall 6 * 512 1.311e+05 1.311e+05 1.311e+05 6.711e+07
Reduce 2 0 1 8 8 8 8
Reduce 2 1 1 8 8 8 8
...
Reduce 2 * 256 8 8 8 2048
Reduce 7 0 1 8 8 8 8
Reduce 7 1 1 8 8 8 8
...
Reduce 7 * 256 8 8 8 2048
---------------------------------------------------------------------------
@--- End of Report --------------------------------------------------------
---------------------------------------------------------------------------
call MPI_INIT( ierr )
call MPI_PCONTROL( 0 )
[ ... ]
call MPI_PCONTROL( 1 )
[ ... ] ! Region of interest
call MPI_PCONTROL( 0 )
[ ... ]
call MPI_FINALIZE( ierr )
call MPI_CONTROL(0)) and later it is switched back for the region of interest. At the end of the region the profiling is disabled again. In this case the profiler will only collect information for the region between the lines call MPI_CONTROL(1) and call MPI_CONTROL(0).
Finally, mpiP has several configurable parameters can set via the environment variable MPIP. For more details, please consult the related documentation at (https://github.com/LLNL/mpiP).
Last edited Mon Aug 2 2021